PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019377-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 507aa    MW: 53356.2 Da    PI: 6.6496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019377-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12313358555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  NNU_019377-RA 313 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 358
                    99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17306368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-13306362No hitNo description
PROSITE profilePS5088817.39308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16310367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9313358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MQPCSREMQG MASLSQMALQ ELQNGQQQQQ QMPNPQQMHQ VQGSHFDHSS HDDFLEQMLS  60
NLPWTDLPGN PKSPWDLNPQ NPNGNAAPNN NGTNNTATNQ KLFNIPIGAS NGKPRDLTED  120
QSSSQPESLH YGFDDSTLLA SRLRQHQISG NSPAAKSMAF QQQLLLSRGV GGGAGMPRLP  180
TSVPGAASLG AESGLLQLPL SLGSADSSDS RLLVDRSRDD VVDASFKSPN PNGEASVQGL  240
YNGFAGSLPR TGQTPNQQHF HHLQTGSMST QNFGAPAATG MNQAPPAAGA PAGGAAPQRQ  300
RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ  360
VKVLSMSRLG GAAAVAPLVA DISSDGGGDC IQASGGRSGN GNQTASSNDS LTMTEHQVAK  420
LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHTRNPT NGNNPLLSSN AEGPSSPSLS  480
VLTVQSATMG NGGGEASVKD ATSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275766.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG93e-92BH066_ARATH; Transcription factor bHLH66
TrEMBLF6HYI30.0F6HYI3_VITVI; Putative uncharacterized protein
STRINGVIT_11s0037g00040.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-65LJRHL1-like 1